Six weeks sequence analysis bootcamp: (2016 Fall)

Week 1: Unix environment

  • Click to download the slides: Introduction to Unix (pdf)
  • Click to download the slides: Ghpcc (pdf)

Week 2: Genomic resources

  • Click to download the slides (pdf)

Week 3: RNA-Seq data processing

  • Click to download the slides (pptx)
  • Click to download the slides (pdf)
  • Click to download Hands on training: RNA-Seq data processing (pdf)
  • Click to the RNA-Seq mapping and quantification excercises (html)

Week 4: Gene expression from RNA-Seq

  • Click to download the slides (pptx)
  • Click to download the slides (pdf)
  • Click A review of RNA-Seq normalization methods (pdf)
  • Click to download Hands on training: RNA-Seq data processing (pdf)

Week 5: RNA-Seq Data Analysis

  • Click to download the slides (pptx)
  • Click to download the slides (pdf)
  • Click to go to R scripts (html)
  • Click to download R scripts (R)
  • Click to download extra R functions (R)
  • Click to download the data (tsv)

  • Please finish the R tutorial below that is required to follow the content of Week 5.
    tryr.codeschool.com


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